RECOMB-Seq 2013 Proceedings

Beijing, China, April 11-12, 2013

PC Chairs: Haixu Tang and Tao Jiang
Keynote Speakers: Inna Dubchak, Bing Ren, and Colin Collins

Full Papers

• Discovering motifs that induce sequencing errors. Manuel Allhoff, Alexander Schönhuth, Marcel Martin, Ivan G Costa, Sven Rahmann and Tobias Marschall. BMC Bioinformatics 14 (Suppl 5) S1 (2013)
• metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. Christina Ander, Ole B Schulz-Trieglaff, Jens Stoye and Anthony J Cox. BMC Bioinformatics 14 (Suppl 5) S2 (2013)
• Joint genotype inference with germline and somatic mutations. Eric Bareke, Virginie Saillour, Jean-François Spinella, Ramon Vidal, Jasmine Healy, Daniel Sinnett and Miklós Csűrös. BMC Bioinformatics 14 (Suppl 5) S3 (2013)
• Discovering and mapping chromatin states using a tree hidden Markov model. Jacob Biesinger, Yuanfeng Wang and Xiaohui Xie. BMC Bioinformatics 14 (Suppl 5) S4 (2013)
• Prioritization of candidate disease genes by topological similarity between disease and protein diffusion profiles. Jie Zhu, Yufang Qin, Taigang Liu, Jun Wang and Xiaoqi Zheng. BMC Bioinformatics 14 (Suppl 5) S5 (2013)
• Bellerophon: a hybrid method for detecting interchromo-somal rearrangements at base pair resolution using next-generation sequencing data. Matthew Hayes and Jing Li. BMC Bioinformatics 14 (Suppl 5) S6 (2013)
• De Bruijn superwalk with multiplicities problem is NP-hard. Evgeny Kapun and Fedor Tsarev. BMC Bioinformatics 14 (Suppl 5) S7 (2013)
• A random-permutations-based approach to fast read alignment. Roy Lederman. BMC Bioinformatics 14 (Suppl 5) S8 (2013)
• Assembling contigs in draft genomes using reversals and block-interchanges. Chi-Long Li, Kun-Tze Chen and Chin Lung Lu. BMC Bioinformatics 14 (Suppl 5) S9 (2013)
• An optimized algorithm for detecting and annotating regional differential methylation. Sheng Li, Francine E Garrett-Bakelman, Altuna Akalin, Paul Zumbo, Ross Levine, Bik L To, Ian D Lewis, Anna L Brown, Richard J D’Andrea, Ari Melnick and Christopher E Mason. BMC Bioinformatics 14 (Suppl 5) S10 (2013)
• A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues. Yi Li and Xiaohui Xie. BMC Bioinformatics 14 (Suppl 5) S11 (2013)
• Gene prediction in metagenomic fragments based on the SVM algorithm. Yongchu Liu, Jiangtao Guo, Gangqing Hu and Huaiqiu Zhu. BMC Bioinformatics 14 (Suppl 5) S12 (2013)
• Evaluating genome architecture of a complex region via generalized bipartite matching. Christine Lo, Sangwoo Kim, Shay Zakov and Vineet Bafna. BMC Bioinformatics 14 (Suppl 5) S13 (2013)
• CLASS: constrained transcript assembly of RNA-seq reads. Li Song and Liliana Florea. BMC Bioinformatics 14 (Suppl 5) S14 (2013)
• A novel min-cost flow method for estimating transcript expression with RNA-Seq. Alexandru I Tomescu, Anna Kuosmanen, Romeo Rizzi and Veli Mäkinen. BMC Bioinformatics 14 (Suppl 5) S15 (2013)
• Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing. Xi Wang and Murray J Cairns. BMC Bioinformatics 14 (Suppl 5) S16 (2013)
• De novo inference of stratification and local admixture in sequencing studies. Yu Zhang. BMC Bioinformatics 14 (Suppl 5) S17 (2013)
• Optimal assembly for high throughput shotgun sequencing. Guy Bresler, Ma’ayan Bresler and David Tse. BMC Bioinformatics 14 (Suppl 5) S18 (2013)