RECOMB-Seq 2016 Proceedings
Los Angeles, CA, United States, April 19-20, 2016
PC Chairs: Carl Kingsford and Alexander Schoenhuth
Keynote Speakers: Jared Simpson and Christina Boucher
Full Papers
- Accurate self correction of errors in long reads using de Bruijn graphs. Leena Salmela, Riku Walve, Eric Rivals and Esko Ukkonen. Bioinformatics, 33 (6): 799–806
- Designing robust watermark barcodes for multiplex long-read sequencing. Joaquín Ezpeleta, Flavia J. Krsticevic, Pilar Bulacio and Elizabeth Tapia. Bioinformatics, 33 (6): 807-813
- COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge. Yang Lu, Ting Chen, Jed Fuhrman and Fengzhu Sun. Bioinformatics, 33 (6): 791-798
Short Talks Selected from Abstracts
- Recycler: an algorithm for detecting plasmids from de novo assembly graphs. Roye Rozov, Aya Brown Kav, David Bogumil, Itzhak Mizrahi, Eran Halperin and Ron Shamir.
- plasmidSPAdes: assembling plasmids from whole genome sequencing data. Dmitry Antipov, Nolan Hartwick, Max Shen, Michael Rayko, Alla Lapidus and Pavel Pevzner.
- Fast, lightweight clustering of de novo transcriptomes using fragment equivalence classes. Avi Srivastava, Hirak Sarkar, Laraib Malik and Robert Patro.
- Single-molecule protein identification by sub-nanopore sensors. Mikhail Kolmogorov, Eamonn Kennedy, Zhuxin Dong, Gregory Timp and Pavel Pezvner.
- gReC 2.0: new algorithmic challenges of adaptive immune repertoire construction. Alexander Shlemov, Sergey Bankevich, Andrey Bzikadze and Yana Safonova.
- Efficient index maintenance under dynamic genome modification. Nitish Gupta, Komal Sanjeev, Tim Wall, Carl Kingsford and Rob Patro.
- NASCUP: nucleic acid sequence classification by universal probability. Sunyoung Kwon, Gyuwan Kim, Byunghan Lee, Sungroh Yoon and Young-Han Kim.