RECOMB-Seq 2019 Proceedings

Washington DC, United States, May 3-4, 2019

PC Chairs: Christina Boucher and Vikas Bansal
Keynote Speakers: Adam Phillippy and Melissa Gymrek

Full Papers

  • GenMap: Fast and Exact Computation of Genome Mappability. Christopher Pockrandt, Mai Alzamel, Costas Iliopoulos and Knut Reinert. Bioinformatics, 36(12): 3687-3692, 2020
  • Samovar: Single-sample mosaic SNV calling with linked reads. Charlotte A. Darby, James R. Fitch, Patrick J. Brennan, Benjamin J. Kelly, Natalie Bir, Vincent Magrini, Jeffrey Leonard, Catherine E. Cottrell, Julie M. Gastier-Foster, Richard K. Wilson, Elaine R. Mardis, Peter White, Ben Langmead and Michael C. Schatz . iScience, 18: 1-10, 2019
  • PathRacer: racing profile HMM paths on assembly graph. Alexander Shlemov and Anton Korobeynikov. bioRxiv 562579
  • Accurate and Efficient Mapping of the Cross-linked microRNA-mRNA Duplex Reads. Cuncong Zhong and Shaojie Zhang. iScience, 18: 11-19, 2019
  • MALVA: genotyping by Mapping-free ALlele detection of known VAriants. Giulia Bernardini, Paola Bonizzoni, Luca Denti, Marco Previtali and Alexander Schönhuth. iScience, 18: 20-27, 2019
  • Kevlar: a mapping-free framework for accurate discovery of de novo variants. Daniel Standage, C. Titus Brown and Fereydoun Hormozdiari. iScience, 18: 28-36, 2019
  • Parallel decompression of gzip-compressed files and random access to DNA sequences. Maël Kerbiriou and Rayan Chikhi. overlay preprint
  • Indexing De Bruijn graphs with minimizers. Camille Marchet, Maël Kerbiriou and Antoine Limasset. overlay preprint
  • CONSENT: Scalable self-correction of long reads with multiple sequence alignment. Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq and Arnaud Lefebvre. overlay preprint
  • Graph analysis of fragmented long-read bacterial genome assemblies. Pierre Marijon, Rayan Chikhi and Jean-Stéphane Varré. overlay preprint
  • Improved Representation of Sequence Bloom Trees. Robert S. Harris and Paul Medvedev. overlay preprint
  • Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ. Ilia Minkin and Paul Medvedev. overlay preprint
  • Nebula: Ultra-efficient mapping free structural variant genotyper. Parsoa Khorsand and Fereydoun Hormozdiari. overlay preprint