RECOMB-Seq 2020 Proceedings

Padova, Italy (virtual), June 26-27, 2020

PC Chairs: Leena Salmela and Rob Patro
Keynote Speakers: Paola Bonizzoni and Zamin Iqbal

Full Papers

  • Spherical thresholding improves sketching of single-cell transcriptomic heterogeneity. Van Hoan Do, Khaled Elbassioni and Stefan Canzar. iScience, 23(6): 101126, 2020 S1
  • HASLR: Fast Hybrid Assembly of Long Reads. Ehsan Haghshenas, Hossein Asghari, Jens Stoye, Cedric Chauve and Faraz Hach. iScience, 23(8): 101389, 2020 S2
  • BATMAN: fast and accurate integration of single-cell RNA-Seq datasets via minimum-weight matching. Igor Mandric, Brian Hill, Malika Freund, Michael Thompson and Eran Halperin. iScience 23(6): 101185, 2020 S3
  • Scalable pairwise whole-genome homology mapping of large genomes with BubbZ. Ilia Minkin and Paul Medvedev. iScience 23(6): 101224, 2020 S4
  • Hierarchically labeled database indexing allows scalable characterization of microbiomes. Filippo Utro, Niina Haiminen, Enrico Siragusa, Laura-Jayne Gardiner, Edward Seabolt, Ritesh Krishna, James Kaufman and Laxmi Parida. iScience 23(4): 100988, 2020 S5
  • Maximal Perfect Haplotype Blocks with Wildcards. Lucia Williams and Brendan Mumey. iScience 23(6): 101149, 2020 S6
  • CONNET: Accurate Diploid Genome Consensus in de novo Assembly of Nanopore Sequencing Data via Deep Learning. Yifan Zhang, Chi-Man Liu, Henry Cm Leung, Ruibang Luo and Tak-Wah Lam. iScience 23(5): 101128, 2020 S7
  • TALC: Transcription-aware long read correction. Lucile Broseus, Aubin Thomas and William Ritchie. overlay preprint
  • Metalign: Efficient alignment-based metagenomic profiling via containment min hash. Nathan Lapierre, Mohammed Alser, Eleazar Eskin, David Koslicki and Serghei Mangul. overlay preprint
  • SCAPP: An algorithm for improved plasmid assembly in metagenomes. David Pellow, Maraike Probst, Ori Furman, Alvah Zorea, Arik Segal, Itzik Mizrahi and Ron Shamir. overlay preprint

Short Talks Selected from Abstracts

  • Visualisation of multiple sequence alignment structures. Paulina Knut, Paulina Dziadkiewicz and Norbert Dojer.
  • Comparison of kNN and k-means optimization methods of reference set selection for improved CNV callers performance. Wiktor Kuśmirek.
  • Enough to speak true: benchmarking long-read genome sequence alignment tools for human genomics applications. Jonathan Lotempio, Emmanuele Delot and Eric Vilain.
  • Association of alternative splicing in PICALM with Alzheimer’s disease progression. Juhyun Park, Senggyun Han, Kwangsik Nho and Younghee Lee.
  • Weighted minimizer sampling improves long read mapping. Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Sergey Koren and Adam Phillippy.
  • EpiScanpy: a single cell epigenomics analysis pipeline. Anna Danese, Maria Richter, Kridsadakorn Chaichoompu, David Fischer, Fabian Theis and Maria Colomé-Tatché.