| Session | Sunday | Title | Author(s) |
| Breakfast | 9:00 AM | | |
| Keynote (Chaired by Ritambhara Singh) | 9:30 AM | A new view on sequence alignments: from interactions to language model | Mona Singh |
| Coffee Break | 10:30 AM | | |
| Proceedings (Chaired by Lucy Williams) | 10:45 AM | Synthetic promoter design in Escherichia coli based on multinomial diffusion model | Qixiu Du, May Nee Poon, Xiaocheng Zeng, Pengcheng Zhang, Zheng Wei, Haochen Wang, Ye Wang, Lei Wei and Xiaowo Wang |
| 11:10 AM | Quick and effective approximation of in silico saturation mutagenesis experiments with first-order Taylor expansion | Alexander Sasse, Sara Mostafavi and Maria Chikina |
| 11:35 AM | Flowtigs: safety in flow decompositions for assembly graphs | Francisco Sena, Eliel Ingervo, Shahbaz Khan, Andrey Prjibelski, Sebastian Schmidt and Alexandru Tomescu |
| Lunch break | 12:00 PM | | |
| Short-Talks I (Chaired by Baraa Orabi) | 1:30 PM | Comprehensive Tissue-Specific Somatic Mutation Profiling via RNA-seq in Diverse Mice | Alexis Garretson and Beth L Dumont |
| 1:40 PM | VISTA: An integrated framework for structural variant discovery | Varuni Sarwal, Seungmo Lee, Jianzhi Yang, Sriram Sankararaman, Mark Chaisson, Eleazar Eskin and Serghei Mangul |
| 1:50 PM | An efficient and accurate germline SNP caller for long-read RNA sequencing data | Neng Huang and Heng Li |
| 2:00 PM | Analyzing the relatedness of genomic variation in malaria parasites using a reference-free approach | Cecile P G Meier-Scherling, Tavor Baharav, Karamoko Niaré, Julia Salzman, Lorin Crawford and Jeffrey A Bailey |
| Break | 2:10 PM | | |
| Short-Talks II (Chaired by Li Song) | 2:30 PM | Identification of B cell subsets based on antigen receptor sequences using deep learning | Hyunho Lee, Kyoungseob Shin, Yongju Lee, Soobin Lee, Seungyoun Lee, Eunjae Lee, Seung Woo Kim, Ha Young Shin, Jong Hoon Kim, Junho Chung and Sunghoon Kwon |
| (canceled) | Comprehensive benchmarking of methods to infer from TCR-Seq data | Mohammad Vahed, Yu Ning Huang, Jiaqi Fu, Kerui Peng and Serghei Mangul |
| 2:40 PM | Optimizing Design of Genomics Studies for Clonal Evolution Analysis | Arjun Srivatsa and Russell Schwartz |
| Posters | 3:30 PM | (see list below) | |
| Overlay (Chaired by Askar Gafurov) | 4:30 PM | Quality assessment of splice site annotation based on conservation across multiple species | Ilia Minkin and Steven Salzberg |
| 4:55 PM | MaskGraphene: Advancing joint embedding, clustering, and batch correction for spatial transcriptomics using graph-based self-supervised learning | Yunfei Hu, Yikang Li, Manfei Xie, Mingxing Rao, Yichen Henry Liu and Xin Maizie Zhou |
| 5:20 PM | Investigating the performance of foundation models on human 3’UTR sequences | Sergey Vilov and Matthias Heinig |
| Closing | 5:45 PM | | |