Session | Time | Title | Author(s) |
Breakfast | 9:00 AM | | |
Keynote | 9:30 AM | Challenges in de novo sequence assembly | Heng Li |
Coffee Break | 10:30 AM | | |
Proceedings | 10:45 AM | Movi: a fast and cache-efficient full-text pangenome index | Mohsen Zakeri, Nathaniel Brown, Omar Ahmed, Travis Gagie and Ben Langmead |
11:10 AM | Building a Pangenome Alignment Index via Recursive Prefix-Free Parsing | Eddie Ferro, Marco Oliva, Travis Gagie and Christina Boucher |
11:35 AM | The Backpack Quotient Filter: a dynamic and space-efficient data structure for querying k-mers with abundance | Victor Levallois, Pierre Peterlongo, Yoann Dufresne, Bertrand Le Gal and Francesco Andreace |
Lunch break | 12:00 PM | | |
Short-Talks I | 1:30 PM | Compressed Indexing for Pangenome Substring Queries | Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine Jenike, Sam Kovaka, Michael C. Schatz and Ben Langmead |
1:40 PM | Pan-genome de Bruijn Graph using the Bidirectional FM-index | Lore Depuydt, Luca Renders, Thomas Abeel and Jan Fostier |
1:50 PM | Mumemto: efficient maximal matching across multiple genomes | Vikram Shivakumar and Ben Langmead |
2:00 PM | A*PA & A*PA2: Up to 20 times faster exact global pairwise alignment | Ragnar Groot Koerkamp and Pesho Ivanov |
Break | 2:10 PM | | |
Short-Talks II | 2:30 PM | Accelerating whole-genome alignment using parallel chaining algorithm | Ghanshyam Chandra and Chirag Jain |
2:40 PM | Full resolution HLA and KIR genes annotation for human genome assemblies | Ying Zhou, Li Song and Heng Li |
2:50 PM | Combining DNA and protein alignments to improve genome annotation with LiftOn | Kuan-Hao Chao, Jakob M Heinz, Celine Hoh, Alan Mao, Alaina Shumate, Mihaela Pertea and Steven L Salzberg |
3:00 PM | DupCaller enables robust detection of somatic mutations from Error-Corrected Sequencing | Yuhe Cheng and Ludmil B Alexandrov |
Posters | 3:30 PM | (see list below) | |
Overlay | 4:30 PM | PLA-complexity of k-mer multisets | Md Hasin Abrar and Paul Medvedev |
4:55 PM | Phasing Diploid Genome Assembly Graphs with Single-Cell Strand Sequencing | Mir Henglin, Maryam Ghareghani, William Harvey, David Porubsky, Sergey Koren, Evan Eichler, Peter Ebert and Tobias Marschall |
5:20 PM | CNVeil enables accurate and robust tumor subclone identification and copy number estimation from single cell sequencing data | Weiman Yuan, Can Luo, Yunfei Hu, Liting Zhang, Zihang Wen, Yichen Henry Liu, Xian Mallory and Xin Maizie Zhou |
Closing | 5:45 PM | | |